FEV_KEGG.Experiments.01 module

Question

Which reaction edges (substrate -> reaction ID -> product) are present in eco00260, but not in eco01100?

Method

• Download pathway description as KGML.
• Convert to substance-reaction graph.
• Calculate difference (eco00260 - eco01100). Do not subtract nodes, to keep all surviving edges.
• Print reaction edges (substrate -> reaction ID -> product).

Result

17 results
C00022 -> R00221 -> C00740
C00037 -> R00371 -> C03508
C00037 -> R03425 -> C00011
C00065 -> R01800 -> C02737
C00101 -> R04125 -> C00014
C00101 -> R04125 -> C02972
C00114 -> R01025 -> C00576
C00188 -> R01465 -> C03508
C00740 -> R00221 -> C00022
C01242 -> R04125 -> C00014
C01242 -> R04125 -> C02972
C01888 -> R02529 -> C00546
C02051 -> R03425 -> C00011
C02051 -> R03425 -> C01242
C02972 -> R03815 -> C02051
C03508 -> R00371 -> C00037
C05519 -> R10851 -> C03508

Conclusion

Global map 01100 does not necessarily contain all reaction edges for an organism.