FEV_KEGG.Experiments.06 module

Question

Which genes, independent from substrate/product, are present in eco00260, but not in eco01100?

Method

• Download pathway description as KGML.
• Convert to substance-reaction graph.
• Convert to substance-gene graph.
• Get set of genes for each graph.
• Calculate difference of gene sets.
• Print genes (gene ID).

Result

3 results
eco:b2366
eco:b3616
eco:b3617

Conclusion

Global map 01100 does not necessarily contain all enzyme-coding genes for an organism.