FEV_KEGG.Experiments.15 module

Question

Which EC numbers occur in either E. coli (eco) or S. solfataricus (sso) within the Serine, Glycine, Threonine pathway (00260)?

Method

  • Get 00260 pathways of eco and sso from KEGG.
  • Convert each pathway into a substance-ecNumber graph. This is the incomplete metabolic network.
  • Combine both species’ networks to a consensus network, by INTERSECTION operation.
  • Create the networks of EC numbers that only occur in 1) eco, and 2) sso.
  • Print those EC numbers.

Result

EC numbers occuring only in eco:
18 results
1.1.1.-
1.1.1.103
1.1.1.215
1.1.1.3
1.1.1.381
1.1.1.79
1.1.1.81
1.1.99.1
1.2.1.8
2.3.1.29
2.6.1.52
2.7.2.4
2.7.8.8
3.1.3.3
4.1.2.48
4.3.1.17
4.3.1.18
5.4.2.11
EC numbers occuring only in sso:
1 results
1.5.3.1

Conclusion

The results are consistent with the pathway image to be found on KEGG.